PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000328.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 554aa    MW: 58000.4 Da    PI: 4.2846
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000328.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12305348755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 e+Er+RR+++N+++ +Lr+l+P+      +K++ a+iL  A++YI  Lq
  Do000328.1 305 EAERKRRKKLNTRLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 348
                 89*********************7.....7***************9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-17296359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.77298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-16304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.25E-13305352No hitNo description
Gene3DG3DSA:4.10.280.102.8E-15305359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10305348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00872433497No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MGGGDHQCMA AAAAAAAGDG GASVEAALRP LVGADAWDYC IYWRLSPDQR FLEMTGFCCS  60
SEFEAQVSAL GELPSSMPLD SSSAGMHAEA MVSNQPIWQA SCVPELPTSY SSEPGSGGPR  120
TRLLVPVAGG LVELFAARYM AEEEQMAELV MAQCGVPARA GDGEGNEGGV VHAWPEAPGF  180
AWDGAAAGAG ADPQRMYGAA VPSLNLFDSA GNVAGDPFLA APPGAVDDAA AAGWQYASAA  240
AGSEPPVVAV QQEQQLHGAA GAGGADSGSE GSDMQGDPED DGDGDAQGRG GGKGGGKRQQ  300
CKNLEAERKR RKKLNTRLYK LRSLVPNITK MDRASILGDA IDYIVGLQNQ VKALQDELED  360
PADGAPDVLL DHPPPASLVG LENDDSPRTS LHQTAPLAGS KRPLAAAAAE DEKGHDMEPQ  420
VEVRQVEANE FFLQVLCEHK PGRFVRLMDA MNAQGLEVTN VNVTSYKTLV LNVFRVVRRD  480
SEVAVQADRV RDSLLEVTRE SYGVWSSAPT VGSSSSIDVK LDCVDVKLDG VDAQAPAAAE  540
DHYGGYNHLL QYLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288296RGGGKGGGK
2306313ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0343260.0BT034326.1 Zea mays full-length cDNA clone ZM_BFc0007A07 mRNA, complete cds.
GenBankBT0427910.0BT042791.1 Zea mays full-length cDNA clone ZM_BFc0041J08 mRNA, complete cds.
GenBankBT0630100.0BT063010.2 Zea mays full-length cDNA clone ZM_BFc0017C04 mRNA, complete cds.
GenBankBT0631180.0BT063118.1 Zea mays full-length cDNA clone ZM_BFc0027J15 mRNA, complete cds.
GenBankBT0657170.0BT065717.1 Zea mays full-length cDNA clone ZM_BFc0042K04 mRNA, complete cds.
GenBankBT0677850.0BT067785.1 Zea mays full-length cDNA clone ZM_BFc0159F07 mRNA, complete cds.
GenBankBT0688360.0BT068836.1 Zea mays full-length cDNA clone ZM_BFc0079O03 mRNA, complete cds.
GenBankBT0880900.0BT088090.1 Zea mays full-length cDNA clone ZM_BFc0009P17 mRNA, complete cds.
GenBankBT0882990.0BT088299.1 Zea mays full-length cDNA clone ZM_BFc0123M15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700934.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2
RefseqXP_012700935.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2
RefseqXP_012700936.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2
RefseqXP_012700937.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2
SwissprotQ6YUS30.0TDR_ORYSJ; Transcription factor TDR
TrEMBLK3XW910.0K3XW91_SETIT; Uncharacterized protein
STRINGSi006199m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55303449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-53bHLH family protein